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Faculty Detail    
Name JOHN DAVID OSBORNE
  
Campus Address ALGE 456 Zip 0007
Phone  (205) 996-0736
E-mail  ozborn@uab.edu
Other websites Google Scholar
PubMed
     


Faculty Appointment(s)
Appointment Type Department Division Rank
Primary    Associate Professor
Secondary  Computer Science  Computer Science Assistant Professor
Center  Comprehensive Cancer Center  Comprehensive Cancer Center Associate Professor
Center  Ctr for Clinical & Translational Sci  Ctr for Clinical & Translational Sci Associate Professor

Biographical Sketch 
My background was in genetics at the University of Alberta before switching to computer science and doing bioinformatics. I originally focused on viral and microbial sequencing and sequence analysis before doing my PhD in Natural Language Processing at UAB. My lab primarily focuses on creating new methods and data sets to extract information from scientific and clinical text.



Research/Clinical Interest
Title
Clinical phenotyping and Natural Language Processing of Biomedical Text
Description
Identifying clinical phenotypes of interest using clinical text and electronic health records using machine learning. I also do information extraction in biomedical text as well as ontology and shared data set development.

Keywords
Natural Language Processing, Machine Learning, Phenotyping, Concept Normalization